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Recent Publications

16.08.2022

  1. The inner nuclear membrane Lem2 coordinates RNA degradation at the nuclear periphery.
    Martín Caballero L
    , Capella M, Barrales RR, Dobrev N, van Emden T, Hirano Y, Suma Sreechakram VN, Fischer-Burkart S, Kinugasa Y, Nevers A, Rougemaille M, Sinning I, Fischer T, Hiraoka Y, and Braun S.
    Nature Struct & Mol Biol 2022 29(9):910-921. doi: 10.1038/s41594-022-00831-6.
    Article

  2. XPC-PARP complexes engage the chromatin remodeler ALC1 to catalyze global genome DNA damage repair.
    Blessing C, Apelt K, van den Heuvel D, Gonzalez-Leal C, Rother MB, van der Woude M, González-Prieto R, Yifrach A, Parnas A, Shah RG, Kuo TT, Boer DEC, Cai J, Kragten A, Kim HS, Schärer OD, Vertegaal ACO, Shah GM, Adar S, Lans H, van Attikum H, Ladurner AG and Luijsterburg MS.
    Nat Commun. 2022 Aug 13;13(1):4762. doi: 10.1038/s41467-022-31820-4.
    PubMed

  3. Chaperoning heterochromatin: new roles of FACT in chromatin silencing.
    Murawska M and Braun S.
    Trends Genet. 2022 Mar 15; S0168-9525(22)00038-5. doi: 10.1016/j.tig.2022.02.011.
    PubMed

  4. H3K36 methylation and DNA-binding both promote Ioc4 recruitment and Isw1b remodeler function.
    Li J, Bergmann L, Rafael de Almeida A, Webb KM, Gogol MM, Voigt P, Liu Y, Liang H, and Smolle MM.
    Nucleic Acids Res. 2022 Feb 21, doi: 10.1093/nar/gkac077. Online ahead of print.
    PubMed

  5. Rbfox1 is required for myofibril development and maintaining fiber type-specific isoform expression in Drosophila muscles.
    Nikonova E, Mukherjee A, Kamble K, Barz C, Nongthomba U, Spletter ML.
    Life Sci Alliance. 2022 Jan 7;5(4):e202101342. doi: 10.26508/lsa.202101342.
    PubMed

  6. Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.
    Ringeling FR, Chakraborty S, Vissers C, Reiman D, Patel AM, Lee KH, Hong A, Park CW, Reska T, Gagneur J, Chang H, Spletter ML, Yoon KJ, Ming GL, Song H, Canzar S.
    Nat Biotechnol. 2022 Jan 10. doi: 10.1038/s41587-021-01136-7.
    PubMed

  7. Benchmarking atlas-level data integration in single-cell genomics.
    Luecken MD, Büttner M, Chaichoompu K, Danese A, Interlandi M, Mueller MF, Strobl DC, Zappia L, Dugas M, Colomé-Tatché M and Theis FJ.
    Nat Methods. 2021 Dec 23. doi: 10.1038/s41592-021-01336-8.
    PubMed

  8. Evolution of a histone variant involved in compartmental regulation of NAD metabolism.
    Guberovic I, Hurtado-Bagès S, Rivera-Casas C, Knobloch G, Malinverni R, Valero V, Leger MM, García J, Basquin J, Gómez de Cedrón M, Frigolé-Vivas M, Cheema MS, Pérez A, Ausió J, Ramírez de Molina A, Salvatella X, Ruiz-Trillo I, Eirin-Lopez JM, Ladurner AG and Buschbeck M.
    Nat Struct Mol Biol. 2021 Dec;28(12):1009-1019. doi: 10.1038/s41594-021-00692-5.
    PubMed

  9. Allele-specific assembly of a eukaryotic genome corrects apparent frameshifts and reveals a lack of nonsense-mediated mRNA decay.
    Cosentino RO, Brink BG and Siegel TN.
    NAR Genom Bioinform. 2021 Sep 16;3(3):lqab082. doi: 10.1093/nargab/lqab082. eCollection 2021
    PubMed

  10. The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states.
    Murawska M, Greenstein RA, Schauer T, Olsen KCF, Ng H, Ladurner AG, Al-Sady B and Braun S.
    Cell Rep. 2021, DOI:https://doi.org/10.1016/j.celrep.2021.109944
    PubMed
  11. Chemical synthesis of linear ADP-ribose oligomers up to pentamer and their binding to the oncogenic helicase ALC1.
    Liu Q, Knobloch G, Voorneveld J, Meeuwenoord NJ, Overkleeft HS, van der Marel GA, Ladurner AG and Filippov DV.
    Chem Sci. 2021 Aug 18;12(37):12468-12475. doi: 10.1039/d1sc02340c. eCollection 2021 Sep 29.
    PubMed